Related genomes of genome MYCPE based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

MYCPE - Mycoplasma penetrans (strain HF-2)

Proteome version: 02-MAR-2010 (Rel. 118, Last updated, Version 118) with 1028 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	MYCGF	Mycoplasma gallisepticum (strain F)	282
2	MYCGH	Mycoplasma gallisepticum (strain R(high / passage 156))	279
3	MYCGA	Mycoplasma gallisepticum (strain R(low / passage 15 / clone 2))	278
4	MYCPN	Mycoplasma pneumoniae (strain ATCC 29342 / M129)	260
5	MYCFP	Mycoplasmopsis fermentans (strain ATCC 19989 / NBRC 14854 / NCTC 10117 / PG18)	256
6	MYCFM	Mycoplasmopsis fermentans (strain M64)	255
7	BACCQ	Bacillus cereus (strain Q1)	255
8	BACAH	Bacillus thuringiensis (strain Al Hakam)	254
9	BACC0	Bacillus cereus (strain AH820)	254
10	BACHK	Bacillus thuringiensis subsp. konkukian (strain 97-27)	253

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	9
2	VITCO	Vittaforma corneae (strain ATCC 50505)	11
3	NANGC	Nannochloropsis gaditana (strain CCMP526)	12
4	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	12
5	TRYCI	Trypanosoma congolense (strain IL3000)	12
6	EDHAE	Edhazardia aedis (strain USNM 41457)	12
7	ENTBH	Enterocytozoon bieneusi (strain H348)	12
8	MEGSC	Megaselia scalaris	16
9	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	18
10	NEMP3	Nematocida parisii (strain ERTm3)	18