Related genomes of genome OPITP based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

OPITP - Opitutus terrae (strain DSM 11246 / JCM 15787 / PB90-1)

Proteome version: 01-JUL-2008 (Rel. 93, Last updated, Version 2) with 4588 proteins.

‹

Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	PEDPL	Pedosphaera parvula (strain Ellin514)	1055
2	SOLUE	Solibacter usitatus (strain Ellin6076)	1012
3	CORAD	Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865 / 04OKA010-24)	1009
4	NIAKG	Niastella koreensis (strain DSM 17620 / KACC 11465 / NBRC 106392 / GR20-10)	883
5	SPILD	Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896)	874
6	LUTPR	Luteitalea pratensis	871
7	CHIPD	Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / LMG 13176 / NBRC 15968 / NCIMB 11800 / UQM 2034)	835
8	ANASK	Anaeromyxobacter sp. (strain K)	826
9	PONDE	Pontiella desulfatans	821
10	ANAD2	Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258)	814

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	15
2	TRAHO	Trachipleistophora hominis	20
3	VITCO	Vittaforma corneae (strain ATCC 50505)	21
4	NEMP3	Nematocida parisii (strain ERTm3)	23
5	TRYCI	Trypanosoma congolense (strain IL3000)	23
6	EDHAE	Edhazardia aedis (strain USNM 41457)	24
7	VAVCU	Vavraia culicis (isolate floridensis)	26
8	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	29
9	NOSB1	Nosema bombycis (strain CQ1 / CVCC 102059)	31
10	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	31