Related genomes of genome OSTED based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

OSTED - Ostrea edulis

Proteome version: Refseq; xbOstEdul1.1; GCF_947568905.1; 18-MAY-2023; GCF_947568905.1-RS_2023_05 with 27763 genes / 57349 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	CRAGI	Crassostrea gigas	17070
2	PECMA	Pecten maximus	10448
3	MERMC	Mercenaria mercenaria	9695
4	MYAAR	Mya arenaria	9623
5	APLCA	Aplysia californica	9354
6	GIGAE	Gigantopelta aegis	7982
7	POMCA	Pomacea canaliculata	7125
8	PATVU	Patella vulgata	7022
9	BIOGL	Biomphalaria glabrata	6838
10	BULTR	Bulinus truncatus	6308

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	29
2	ZINIC	Zinderia insecticola (strain CARI)	35
3	UC116	Patescibacteria group bacterium E44_bin74	36
4	MYCHA	Mycoplasma haemolamae (strain Purdue)	39
5	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	40
6	UC087	Candidatus Pacebacteria bacterium LF-bin-483	41
7	UC105	Patescibacteria group bacterium Baikal-deep-G193	42
8	MYCS3	Mycoplasma suis (strain KI_3806)	43
9	MYCSL	Mycoplasma suis (strain Illinois)	45
10	UC077	Candidatus Microgenomates bacterium NC_groundwater_396_Ag_B-0.1um_42_16	49