Related genomes of genome PANTR based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

PANTR - Pan troglodytes

Proteome version: Ensembl Main 91; Pan_tro_3.0 with 23534 genes / 49688 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	PANPA	Pan paniscus	18581
2	GORGO	Gorilla gorilla gorilla	18026
3	MACFA	Macaca fascicularis	17195
4	HUMAN	Homo sapiens	17095
5	MACNE	Macaca nemestrina	16914
6	CERAT	Cercocebus atys	16867
7	PONAB	Pongo abelii	16758
8	RHIRO	Rhinopithecus roxellana	16582
9	NOMLE	Nomascus leucogenys	16219
10	COLAP	Colobus angolensis palliatus	16068

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	32
2	UC116	Patescibacteria group bacterium E44_bin74	42
3	ZINIC	Zinderia insecticola (strain CARI)	44
4	MYCHA	Mycoplasma haemolamae (strain Purdue)	45
5	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	47
6	UC087	Candidatus Pacebacteria bacterium LF-bin-483	49
7	MYCS3	Mycoplasma suis (strain KI_3806)	53
8	UC105	Patescibacteria group bacterium Baikal-deep-G193	54
9	MYCSL	Mycoplasma suis (strain Illinois)	55
10	UC148	bacterium (Candidatus Torokbacteria) CG_4_10_14_0_2_um_filter_35_8	58