Related genomes of genome PARTE based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

PARTE - Paramecium tetraurelia

Proteome version: Ensembl Protists 31; GCA_000165425.1; 18-FEB-2016 with 39259 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	PAROT	Paramecium octaurelia	30844
2	PARPR	Paramecium primaurelia	26922
3	TETTS	Tetrahymena thermophila (strain SB210)	4415
4	WHEAT	Triticum aestivum	3362
5	BRANA	Brassica napus	3289
6	ICHMG	Ichthyophthirius multifiliis (strain G5)	3174
7	ICHMU	Ichthyophthirius multifiliis	3172
8	PSEPJ	Pseudocohnilembus persalinus	3116
9	GOSHI	Gossypium hirsutum	3050
10	STYLE	Stylonychia lemnae	2880

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	19
2	ZINIC	Zinderia insecticola (strain CARI)	26
3	UC116	Patescibacteria group bacterium E44_bin74	29
4	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	32
5	UC087	Candidatus Pacebacteria bacterium LF-bin-483	32
6	UC148	bacterium (Candidatus Torokbacteria) CG_4_10_14_0_2_um_filter_35_8	39
7	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	39
8	MYCHA	Mycoplasma haemolamae (strain Purdue)	40
9	SULMC	Sulcia muelleri (strain CARI)	40
10	MYCHI	Mycoplasma haemofelis (strain Ohio2)	40