Related genomes of genome PATVU based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

PATVU - Patella vulgata

Proteome version: Refseq; xgPatVulg1.2; GCF_932274485.2; 16-MAY-2023; GCF_932274485.2-RS_2023_05 with 16057 genes / 27726 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	APLCA	Aplysia californica	8522
2	GIGAE	Gigantopelta aegis	7350
3	CRAGI	Crassostrea gigas	7233
4	PECMA	Pecten maximus	7111
5	MYAAR	Mya arenaria	7088
6	OSTED	Ostrea edulis	7022
7	MERMC	Mercenaria mercenaria	6928
8	BULTR	Bulinus truncatus	6913
9	LOTGI	Lottia gigantea	6906
10	POMCA	Pomacea canaliculata	6590

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ZINIC	Zinderia insecticola (strain CARI)	29
2	UC116	Patescibacteria group bacterium E44_bin74	29
3	RALSL	Ralstonia solanacearum	30
4	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	35
5	MYCHA	Mycoplasma haemolamae (strain Purdue)	36
6	UC105	Patescibacteria group bacterium Baikal-deep-G193	38
7	MYCS3	Mycoplasma suis (strain KI_3806)	40
8	UC087	Candidatus Pacebacteria bacterium LF-bin-483	43
9	MYCSL	Mycoplasma suis (strain Illinois)	44
10	UC077	Candidatus Microgenomates bacterium NC_groundwater_396_Ag_B-0.1um_42_16	47