Related genomes of genome PHYAS based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

PHYAS - Phytoplasma australiense

Proteome version: 10-FEB-2009 (Rel. 102, Last updated, Version 2) with 780 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	AYWBP	Aster yellows witches'-broom phytoplasma (strain AYWB)	335
2	ONYPE	Onion yellows phytoplasma (strain OY-M)	319
3	PHYMT	Phytoplasma mali (strain AT)	254
4	ACHLI	Acholeplasma laidlawii (strain PG-8A)	223
5	BACC2	Bacillus cereus (strain G9842)	202
6	BACCZ	Bacillus cereus (strain ZK / E33L)	201
7	ENTF6	Enterococcus faecalis (strain 62)	200
8	BACAN	Bacillus anthracis str. 'Ames Ancestor'	200
9	BACC3	Bacillus cereus (strain 03BB102)	199
10	BACAC	Bacillus anthracis (strain CDC 684 / NRRL 3495)	199

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	2
2	TRYCI	Trypanosoma congolense (strain IL3000)	6
3	EDHAE	Edhazardia aedis (strain USNM 41457)	9
4	ENTBH	Enterocytozoon bieneusi (strain H348)	10
5	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	10
6	NANGC	Nannochloropsis gaditana (strain CCMP526)	11
7	VITCO	Vittaforma corneae (strain ATCC 50505)	11
8	SYMMI	Symbiodinium microadriaticum	12
9	MEGSC	Megaselia scalaris	14
10	TRAHO	Trachipleistophora hominis	14