Related genomes of genome PHYAT based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

PHYAT - Physella acuta

Proteome version: Refseq; EWHU_Batt_1.0; GCA_018292915.1; 06-MAY-2021 with 29795 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	POMCA	Pomacea canaliculata	3701
2	APLCA	Aplysia californica	3371
3	HALRU	Haliotis rufescens	2981
4	GIGAE	Gigantopelta aegis	2929
5	MERMC	Mercenaria mercenaria	2924
6	MYAAR	Mya arenaria	2903
7	PECMA	Pecten maximus	2876
8	CRAGI	Crassostrea gigas	2868
9	OSTED	Ostrea edulis	2750
10	BULTR	Bulinus truncatus	2659

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC148	bacterium (Candidatus Torokbacteria) CG_4_10_14_0_2_um_filter_35_8	9
2	UC116	Patescibacteria group bacterium E44_bin74	10
3	RALSL	Ralstonia solanacearum	11
4	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	11
5	ZINIC	Zinderia insecticola (strain CARI)	12
6	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	12
7	UC105	Patescibacteria group bacterium Baikal-deep-G193	12
8	PHYMT	Phytoplasma mali (strain AT)	13
9	MYCHA	Mycoplasma haemolamae (strain Purdue)	14
10	MYCHI	Mycoplasma haemofelis (strain Ohio2)	15