Related genomes of genome PHYMT based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

PHYMT - Phytoplasma mali (strain AT)

Proteome version: 12-MAY-2009 (Rel. 106, Last updated, Version 3) with 462 proteins.

‹

Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	PHYAS	Phytoplasma australiense	254
2	ONYPE	Onion yellows phytoplasma (strain OY-M)	250
3	AYWBP	Aster yellows witches'-broom phytoplasma (strain AYWB)	248
4	ACHLI	Acholeplasma laidlawii (strain PG-8A)	214
5	ENTF6	Enterococcus faecalis (strain 62)	187
6	NIACI	Niallia circulans	186
7	ENTFO	Enterococcus faecalis (strain ATCC 47077 / OG1RF)	183
8	BACC4	Bacillus cereus (strain B4264)	182
9	BACAN	Bacillus anthracis str. 'Ames Ancestor'	182
10	ENTFU	Enterococcus faecium (strain Aus0004)	182

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	1
2	EDHAE	Edhazardia aedis (strain USNM 41457)	7
3	VITCO	Vittaforma corneae (strain ATCC 50505)	7
4	TRYCI	Trypanosoma congolense (strain IL3000)	7
5	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	7
6	ENTBH	Enterocytozoon bieneusi (strain H348)	10
7	SYMMI	Symbiodinium microadriaticum	12
8	SPRLO	Spraguea lophii (strain 42_110)	12
9	NANGC	Nannochloropsis gaditana (strain CCMP526)	13
10	EIMMA	Eimeria maxima	13