Related genomes of genome PLAHL based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

PLAHL - Plasmopara halstedii

Proteome version: Ensembl Protists 44; Plasmopara_halstedii_genome with 15469 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	PHYPR	Phytophthora parasitica	7160
2	PHYPN	Phytophthora parasitica (strain INRA-310)	7018
3	PHYIT	Phytophthora infestans (strain T30-4)	6377
4	PHYSP	Phytophthora sojae (strain P6497)	6259
5	PHYNI	Phytophthora nicotianae	6183
6	PHYRM	Phytophthora ramorum	5670
7	GLOUD	Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144)	5110
8	SAPDV	Saprolegnia diclina (strain VS20)	4693
9	SAPPC	Saprolegnia parasitica (strain CBS 223.65)	4446
10	HYAAE	Hyaloperonospora arabidopsidis (strain Emoy2)	4373

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	19
2	MYCHA	Mycoplasma haemolamae (strain Purdue)	36
3	UC116	Patescibacteria group bacterium E44_bin74	36
4	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	37
5	MYCSL	Mycoplasma suis (strain Illinois)	42
6	ZINIC	Zinderia insecticola (strain CARI)	42
7	UC087	Candidatus Pacebacteria bacterium LF-bin-483	43
8	MYCS3	Mycoplasma suis (strain KI_3806)	43
9	UC105	Patescibacteria group bacterium Baikal-deep-G193	46
10	MYCHN	Mycoplasma haemocanis (strain Illinois)	48