Related genomes of genome POLGL based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

POLGL - Polarella glacialis

Proteome version: Genbank; Pgla_CCMP1383; GCA_905237085.1; 18-FEB-2021 with 58229 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	SYMMI	Symbiodinium microadriaticum	3151
2	BRANA	Brassica napus	2495
3	WHEAT	Triticum aestivum	2460
4	GOSHI	Gossypium hirsutum	2280
5	TOBAC	Nicotiana tabacum	2040
6	SOYBN	Glycine max	1910
7	MISSI	Miscanthus sinensis	1884
8	EMIHU	Emiliania huxleyi CCMP1516	1805
9	PAROT	Paramecium octaurelia	1789
10	PERM5	Perkinsus marinus (strain ATCC 50983 / TXsc)	1718

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC116	Patescibacteria group bacterium E44_bin74	19
2	ZINIC	Zinderia insecticola (strain CARI)	20
3	MYCHA	Mycoplasma haemolamae (strain Purdue)	24
4	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	26
5	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	27
6	MYCSL	Mycoplasma suis (strain Illinois)	27
7	MYCHI	Mycoplasma haemofelis (strain Ohio2)	28
8	MYCS3	Mycoplasma suis (strain KI_3806)	28
9	RALSL	Ralstonia solanacearum	29
10	MYCHN	Mycoplasma haemocanis (strain Illinois)	29