Related genomes of genome PRIM1 based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

PRIM1 - Priestia megaterium (strain ATCC 12872 / QMB1551)

Proteome version: 15-MAY-2014 (Rel. 120, Last updated, Version 5) with 5622 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	PRIM3	Priestia megaterium (strain DSM 319 / IMG 1521)	4473
2	BACCZ	Bacillus cereus (strain ZK / E33L)	2458
3	BACHK	Bacillus thuringiensis subsp. konkukian (strain 97-27)	2433
4	BACC4	Bacillus cereus (strain B4264)	2431
5	BACC3	Bacillus cereus (strain 03BB102)	2426
6	BACAI	Bacillus cereus var. anthracis (strain CI)	2425
7	BACC2	Bacillus cereus (strain G9842)	2423
8	BACT0	Bacillus thuringiensis subsp. finitimus (strain YBT-020)	2421
9	BACC7	Bacillus cereus (strain AH187)	2420
10	BACC0	Bacillus cereus (strain AH820)	2413

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	17
2	VITCO	Vittaforma corneae (strain ATCC 50505)	22
3	EDHAE	Edhazardia aedis (strain USNM 41457)	25
4	TRAHO	Trachipleistophora hominis	28
5	NEMP3	Nematocida parisii (strain ERTm3)	28
6	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	32
7	VAVCU	Vavraia culicis (isolate floridensis)	35
8	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	36
9	SPRLO	Spraguea lophii (strain 42_110)	36
10	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	37