Related genomes of genome PYRF1 based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

PYRF1 - Pyrolobus fumarii (strain DSM 11204 / 1A)

Proteome version: 08-SEP-2011 (Rel. 110, Last updated, Version 3) with 1986 proteins.

‹

Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	PYROC	Pyrodictium occultum	864
2	HYPBU	Hyperthermus butylicus (strain DSM 5456 / JCM 9403 / PLM1-5)	844
3	IGNH4	Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125)	656
4	SULIH	Sulfolobus islandicus (strain HVE10/4)	645
5	SULIL	Sulfolobus islandicus (strain L.S.2.15 / Lassen #1)	640
6	SULIK	Sulfolobus islandicus (strain M.16.4 / Kamchatka #3)	639
7	SULIA	Sulfolobus islandicus (strain M.16.27)	639
8	SULIM	Sulfolobus islandicus (strain M.14.25 / Kamchatka #1)	638
9	SULTO	Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)	637
10	SULID	Sulfolobus islandicus (strain L.D.8.5 / Lassen #2)	634

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	8
2	UC087	Candidatus Pacebacteria bacterium LF-bin-483	18
3	TRYCI	Trypanosoma congolense (strain IL3000)	19
4	UC116	Patescibacteria group bacterium E44_bin74	22
5	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	23
6	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	24
7	MYCSL	Mycoplasma suis (strain Illinois)	27
8	MYCCR	Mycoplasma conjunctivae (strain ATCC 25834 / HRC/581 / NCTC 10147)	27
9	PHYMT	Phytoplasma mali (strain AT)	27
10	ZINIC	Zinderia insecticola (strain CARI)	27