Related genomes of genome PYRHO based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

PYRHO - Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)

Proteome version: 11-SEP-2007 (Rel. 80, Last updated, Version 81) with 2077 proteins.

‹

Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	PYRSN	Pyrococcus sp. (strain NA2)	1367
2	PYRAB	Pyrococcus abyssi (strain GE5 / Orsay)	1351
3	PYRFU	Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)	1280
4	THEKO	Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)	1244
5	THELN	Thermococcus litoralis (strain ATCC 51850 / DSM 5473 / JCM 8560 / NS-C)	1234
6	PYRYC	Pyrococcus yayanosii (strain CH1 / JCM 16557)	1204
7	THES4	Thermococcus sp. (strain CGMCC 1.5172 / 4557)	1200
8	THEBM	Thermococcus barophilus (strain DSM 11836 / MP)	1191
9	THEGJ	Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)	1158
10	THESM	Thermococcus sibiricus (strain DSM 12597 / MM 739)	1134

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ZINIC	Zinderia insecticola (strain CARI)	18
2	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	18
3	SULMC	Sulcia muelleri (strain CARI)	21
4	RALSL	Ralstonia solanacearum	21
5	TRYCI	Trypanosoma congolense (strain IL3000)	22
6	UC116	Patescibacteria group bacterium E44_bin74	23
7	UC087	Candidatus Pacebacteria bacterium LF-bin-483	25
8	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	27
9	MYCSL	Mycoplasma suis (strain Illinois)	28
10	MEGSC	Megaselia scalaris	30