Related genomes of genome RALSL based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

RALSL - Ralstonia solanacearum

Proteome version: 29-JUN-2009 (Rel. 101, Last updated, Version 3) with 1416 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALS8	Ralstonia solanacearum (strain Po82)	983
2	RALSO	Ralstonia solanacearum (strain GMI1000)	907
3	RALP1	Ralstonia pickettii (strain 12D)	523
4	RALPJ	Ralstonia pickettii (strain 12J)	518
5	BURCC	Burkholderia cenocepacia (strain MC0-3)	428
6	BURA4	Burkholderia ambifaria (strain MC40-6)	418
7	BURCH	Burkholderia cenocepacia (strain HI2424)	414
8	BURCM	Burkholderia ambifaria (strain ATCC BAA-244 / AMMD)	411
9	BURGS	Burkholderia gladioli (strain BSR3)	411
10	BURCJ	Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610)	407

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC116	Patescibacteria group bacterium E44_bin74	0
2	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	0
3	TRYCI	Trypanosoma congolense (strain IL3000)	0
4	MYCHJ	Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110)	1
5	ONYPE	Onion yellows phytoplasma (strain OY-M)	1
6	MYCH7	Mycoplasma hyopneumoniae (strain 7448)	1
7	MYCH1	Mycoplasma hyopneumoniae (strain 168)	1
8	MYCSL	Mycoplasma suis (strain Illinois)	1
9	MYCCR	Mycoplasma conjunctivae (strain ATCC 25834 / HRC/581 / NCTC 10147)	1
10	PHYMT	Phytoplasma mali (strain AT)	1