Related genomes of genome RHIIW based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

RHIIW - Rhizophagus irregularis (strain DAOM 197198w)

Proteome version: Ensembl Fungi 48; Rir with 27300 genes / 29911 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	MUCC1	Mucor circinelloides f. circinelloides (strain 1006PhL)	2606
2	PHYBL	Phycomyces blakesleeanus	2435
3	SYNRA	Syncephalastrum racemosum	2364
4	MUCCI	Mucor circinelloides	2354
5	ABSGL	Absidia glauca	2304
6	RHIZD	Rhizopus microsporus	2201
7	SPIPD	Spizellomyces punctatus (strain DAOM BR117)	2195
8	SPIPN	Spizellomyces punctatus	2192
9	RHIO9	Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880)	2125
10	RHIOR	Rhizopus oryzae	2103

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	20
2	UC116	Patescibacteria group bacterium E44_bin74	27
3	ZINIC	Zinderia insecticola (strain CARI)	35
4	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	37
5	MYCHA	Mycoplasma haemolamae (strain Purdue)	37
6	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	40
7	UC087	Candidatus Pacebacteria bacterium LF-bin-483	41
8	UC105	Patescibacteria group bacterium Baikal-deep-G193	44
9	MYCS3	Mycoplasma suis (strain KI_3806)	45
10	MYCSL	Mycoplasma suis (strain Illinois)	46