Related genomes of genome RHOJR based on shared OMA groups

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

RHOJR - Rhodococcus jostii (strain RHA1)

Proteome version: 11-SEP-2007 (Rel. 80, Last updated, Version 20) with 9065 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RHOOB	Rhodococcus opacus (strain B4)	5563
2	RHOE4	Rhodococcus erythropolis (strain PR4 / NBRC 100887)	3666
3	RHOH1	Rhodococcus hoagii (strain 103S)	3033
4	NOCFA	Nocardia farcinica (strain IFM 10152)	2858
5	MYCS2	Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)	2809
6	GORPV	Gordonia polyisoprenivorans (strain DSM 44266 / VH2)	2682
7	MYCSK	Mycobacterium sp. (strain KMS)	2678
8	NOCCG	Nocardia cyriacigeorgica (strain GUH-2)	2664
9	AMYMS	Amycolatopsis mediterranei (strain S699)	2642
10	MYCSS	Mycobacterium sp. (strain MCS)	2638

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	29
2	VITCO	Vittaforma corneae (strain ATCC 50505)	30
3	TRYCI	Trypanosoma congolense (strain IL3000)	31
4	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	32
5	TRAHO	Trachipleistophora hominis	35
6	NEMP3	Nematocida parisii (strain ERTm3)	36
7	EDHAE	Edhazardia aedis (strain USNM 41457)	37
8	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	38
9	NANEQ	Nanoarchaeum equitans (strain Kin4-M)	38
10	VAVCU	Vavraia culicis (isolate floridensis)	39