Related genomes of genome RIPO2 based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

RIPO2 - Rippkaea orientalis (strain PCC 8802)

Proteome version: 03-NOV-2009 (Rel. 113, Last updated, Version 1) with 4403 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RIPO1	Rippkaea orientalis (strain PCC 8801)	3940
2	CROS5	Crocosphaera subtropica (strain ATCC 51142 / BH68)	2856
3	GLOV7	Gloeothece verrucosa (strain PCC 7822)	2768
4	GLOC7	Gloeothece citriformis (strain PCC 7424)	2703
5	NOSS7	Nostoc sp. (strain ATCC 29411 / PCC 7524)	2364
6	MICAN	Microcystis aeruginosa (strain NIES-843)	2362
7	TRIV2	Trichormus variabilis (strain ATCC 29413 / PCC 7937)	2359
8	ANACC	Anabaena cylindrica (strain ATCC 27899 / PCC 7122)	2354
9	STAC7	Stanieria cyanosphaera (strain ATCC 29371 / PCC 7437)	2332
10	NOSS1	Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)	2329

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	13
2	TRAHO	Trachipleistophora hominis	17
3	VITCO	Vittaforma corneae (strain ATCC 50505)	20
4	TRYCI	Trypanosoma congolense (strain IL3000)	25
5	EDHAE	Edhazardia aedis (strain USNM 41457)	25
6	VAVCU	Vavraia culicis (isolate floridensis)	25
7	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	27
8	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	27
9	NEMP3	Nematocida parisii (strain ERTm3)	27
10	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	28