Related genomes of genome SCYTO based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

SCYTO - Scyliorhinus torazame

Proteome version: ENA; Storazame_v1.0; GCA_003427355.1 with 27605 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	CYPCA	Cyprinus carpio carpio	7466
2	SALTR	Salmo trutta	7405
3	SALSA	Salmo salar	7380
4	CHIPU	Chiloscyllium punctatum	7298
5	SINGR	Sinocyclocheilus grahami	7059
6	XENLA	Xenopus laevis	6583
7	DANRE	Danio rerio	4935
8	ANGAN	Anguilla anguilla	4911
9	CALMI	Callorhinchus milii	4818
10	PYGNA	Pygocentrus nattereri	4228

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	MYCHA	Mycoplasma haemolamae (strain Purdue)	11
2	MYCHI	Mycoplasma haemofelis (strain Ohio2)	12
3	MYCHL	Mycoplasma haemofelis (strain Langford 1)	12
4	MYCCR	Mycoplasma conjunctivae (strain ATCC 25834 / HRC/581 / NCTC 10147)	14
5	UC087	Candidatus Pacebacteria bacterium LF-bin-483	14
6	UC105	Patescibacteria group bacterium Baikal-deep-G193	14
7	MYCHN	Mycoplasma haemocanis (strain Illinois)	14
8	UC116	Patescibacteria group bacterium E44_bin74	14
9	MYCS3	Mycoplasma suis (strain KI_3806)	14
10	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	14