Related genomes of genome SPHPG based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

SPHPG - Sphaerochaeta pleomorpha (strain ATCC BAA-1885 / DSM 22778 / Grapes)

Proteome version: 06-DEC-2011 (Rel. 111, Last updated, Version 1) with 3150 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	SPHGB	Sphaerochaeta globosa (strain ATCC BAA-1886 / DSM 22777 / Buddy)	1848
2	SEDSS	Sediminispirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228)	1211
3	SPHCD	Sphaerochaeta coccoides (strain ATCC BAA-1237 / DSM 17374 / SPN1)	1029
4	HYDET	Hydrogenispora ethanolica	948
5	UC182	Candidatus Vecturithrix granuli none	923
6	TRECH	Treponema caldarium (strain ATCC 51460 / DSM 7334 / H1)	826
7	LACSW	Lacrimispora saccharolytica (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1)	811
8	TREAZ	Treponema azotonutricium (strain ATCC BAA-888 / DSM 13862 / ZAS-9)	810
9	TREPZ	Treponema primitia (strain ATCC BAA-887 / DSM 12427 / ZAS-2)	796
10	TREBD	Treponema brennaborense (strain DSM 12168 / CIP 105900 / DD5/3)	781

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	VITCO	Vittaforma corneae (strain ATCC 50505)	19
2	TRYCI	Trypanosoma congolense (strain IL3000)	21
3	ENTBH	Enterocytozoon bieneusi (strain H348)	24
4	EDHAE	Edhazardia aedis (strain USNM 41457)	24
5	NEMP3	Nematocida parisii (strain ERTm3)	26
6	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	27
7	TRAHO	Trachipleistophora hominis	27
8	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	30
9	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	31
10	SPRLO	Spraguea lophii (strain 42_110)	31