Related genomes of genome SYMMI based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

SYMMI - Symbiodinium microadriaticum

Proteome version: Ensembl Protists 54; ASM193914v1 with 43403 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	POLGL	Polarella glacialis	3151
2	WHEAT	Triticum aestivum	647
3	BRANA	Brassica napus	608
4	VITBC	Vitrella brassicaformis (strain CCMP3155)	599
5	EMIHU	Emiliania huxleyi CCMP1516	575
6	GOSHI	Gossypium hirsutum	574
7	GUITH	Guillardia theta	570
8	GUITC	Guillardia theta (strain CCMP2712)	566
9	SOYBN	Glycine max	527
10	TOBAC	Nicotiana tabacum	510

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ZINIC	Zinderia insecticola (strain CARI)	5
2	UC116	Patescibacteria group bacterium E44_bin74	6
3	MYCCR	Mycoplasma conjunctivae (strain ATCC 25834 / HRC/581 / NCTC 10147)	7
4	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	8
5	UC148	bacterium (Candidatus Torokbacteria) CG_4_10_14_0_2_um_filter_35_8	9
6	UC112	Candidatus Gracilibacteria bacterium 28_42_T64	9
7	MYCS5	Mycoplasmopsis synoviae (strain 53)	9
8	UC087	Candidatus Pacebacteria bacterium LF-bin-483	9
9	MYCA5	Mycoplasma arthritidis (strain 158L3-1)	10
10	MYCHM	Mycoplasma hyorhinis (strain MCLD)	10