Related genomes of genome THAPS based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

THAPS - Thalassiosira pseudonana CCMP1335

Proteome version: Ensembl Protists 31; ASM14940v1; 18-FEB-2016 with 11593 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	THAOC	Thalassiosira oceanica	3844
2	PHATC	Phaeodactylum tricornutum (strain CCAP 1055/1)	3208
3	GUITH	Guillardia theta	1963
4	GUITC	Guillardia theta (strain CCMP2712)	1937
5	WHEAT	Triticum aestivum	1933
6	BRANA	Brassica napus	1850
7	GOSHI	Gossypium hirsutum	1715
8	TOBAC	Nicotiana tabacum	1656
9	AURAN	Aureococcus anophagefferens	1633
10	SOYBN	Glycine max	1633

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	25
2	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	35
3	UC116	Patescibacteria group bacterium E44_bin74	35
4	MYCHA	Mycoplasma haemolamae (strain Purdue)	36
5	ZINIC	Zinderia insecticola (strain CARI)	38
6	MYCHN	Mycoplasma haemocanis (strain Illinois)	41
7	UC087	Candidatus Pacebacteria bacterium LF-bin-483	43
8	MYCSL	Mycoplasma suis (strain Illinois)	43
9	MYCHI	Mycoplasma haemofelis (strain Ohio2)	44
10	MYCS3	Mycoplasma suis (strain KI_3806)	44