Related genomes of genome THEP3 based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

THEP3 - Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E)

Proteome version: 01-JUL-2008 (Rel. 93, Last updated, Version 3) with 2192 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	THEPX	Thermoanaerobacter sp. (strain X514)	1861
2	THESX	Thermoanaerobacter sp. (strain X513)	1843
3	THEIA	Thermoanaerobacter italicus (strain DSM 9252 / Ab9)	1591
4	THEM3	Thermoanaerobacter mathranii subsp. mathranii (strain DSM 11426 / CCUG 53645 / CIP 108742 / A3)	1571
5	CALS4	Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)	1489
6	THESW	Thermoanaerobacterium saccharolyticum (strain DSM 8691 / JW/SL-YS485)	1398
7	THETC	Thermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM 571 / NCIMB 9385 / NCA 3814 / NCTC 13789 / WDCM 00135 / 2032)	1363
8	THEXL	Thermoanaerobacterium xylanolyticum (strain ATCC 49914 / DSM 7097 / LX-11)	1360
9	ALKMQ	Alkaliphilus metalliredigens (strain QYMF)	1044
10	U04FI	Firmicutes bacterium Ch29	1042

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	15
2	VITCO	Vittaforma corneae (strain ATCC 50505)	17
3	TRYCI	Trypanosoma congolense (strain IL3000)	19
4	TRAHO	Trachipleistophora hominis	21
5	EDHAE	Edhazardia aedis (strain USNM 41457)	22
6	NEMP3	Nematocida parisii (strain ERTm3)	25
7	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	26
8	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	28
9	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	28
10	NOSCE	Nosema ceranae (strain BRL01)	29