Related genomes of genome TRAPU based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

TRAPU - Trametes pubescens

Proteome version: Ensembl Fungi 48; ASM189594v1 with 14438 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRAVS	Trametes versicolor (strain FP-101664)	7579
2	DICSQ	Dichomitus squalens (strain LYAD-421)	5379
3	PYCCI	Pycnoporus cinnabarinus	5141
4	FOMPI	Fomitopsis pinicola (strain FP-58527)	4903
5	WOLCO	Wolfiporia cocos (strain MD-104)	4711
6	GLOTR	Gloeophyllum trabeum	4612
7	ARMGA	Armillaria gallica	4609
8	GLOTA	Gloeophyllum trabeum (strain ATCC 11539 / FP-39264 / Madison 617)	4604
9	PHLGI	Phlebiopsis gigantea	4540
10	COPCI	Coprinopsis cinerea	4429

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC116	Patescibacteria group bacterium E44_bin74	24
2	RALSL	Ralstonia solanacearum	25
3	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	32
4	ZINIC	Zinderia insecticola (strain CARI)	34
5	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	34
6	UC087	Candidatus Pacebacteria bacterium LF-bin-483	35
7	MYCHA	Mycoplasma haemolamae (strain Purdue)	35
8	UC077	Candidatus Microgenomates bacterium NC_groundwater_396_Ag_B-0.1um_42_16	36
9	MYCS3	Mycoplasma suis (strain KI_3806)	40
10	UC148	bacterium (Candidatus Torokbacteria) CG_4_10_14_0_2_um_filter_35_8	41