Related genomes of genome TRITD based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

TRITD - Triticum turgidum subsp. durum

Proteome version: Ensembl Plants 53; Svevo.v1; GCA_900231445.1 with 66545 genes / 196105 proteins.

‹

Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	WHEAT	Triticum aestivum	55470
2	MISSI	Miscanthus sinensis	23341
3	BRANA	Brassica napus	19735
4	GOSHI	Gossypium hirsutum	19194
5	TOBAC	Nicotiana tabacum	16552
6	TRIUA	Triticum urartu	16402
7	SOYBN	Glycine max	15541
8	SETVI	Setaria viridis	14938
9	MAIZE	Zea mays	14647
10	HORVV	Hordeum vulgare subsp. vulgare	14414

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC116	Patescibacteria group bacterium E44_bin74	48
2	MYCHA	Mycoplasma haemolamae (strain Purdue)	51
3	RALSL	Ralstonia solanacearum	51
4	MYCS3	Mycoplasma suis (strain KI_3806)	51
5	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	51
6	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	53
7	MYCSL	Mycoplasma suis (strain Illinois)	53
8	UC087	Candidatus Pacebacteria bacterium LF-bin-483	56
9	ZINIC	Zinderia insecticola (strain CARI)	57
10	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	59