Related genomes of genome TRIUA based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

TRIUA - Triticum urartu

Proteome version: Ensembl Plants 19; GCA_000347455.1; 26-JUN-2013 with 32635 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	WHEAT	Triticum aestivum	19958
2	TRITD	Triticum turgidum subsp. durum	16402
3	MISSI	Miscanthus sinensis	9122
4	AEGTA	Aegilops tauschii	7292
5	BRANA	Brassica napus	7089
6	SETVI	Setaria viridis	6868
7	GOSHI	Gossypium hirsutum	6832
8	HORVV	Hordeum vulgare subsp. vulgare	6775
9	AEGTS	Aegilops tauschii subsp. strangulata	6640
10	BRADI	Brachypodium distachyon	6638

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	24
2	UC116	Patescibacteria group bacterium E44_bin74	26
3	UC105	Patescibacteria group bacterium Baikal-deep-G193	32
4	ZINIC	Zinderia insecticola (strain CARI)	33
5	MYCS3	Mycoplasma suis (strain KI_3806)	33
6	MYCCR	Mycoplasma conjunctivae (strain ATCC 25834 / HRC/581 / NCTC 10147)	33
7	MYCSL	Mycoplasma suis (strain Illinois)	34
8	MYCHA	Mycoplasma haemolamae (strain Purdue)	34
9	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	34
10	UC148	bacterium (Candidatus Torokbacteria) CG_4_10_14_0_2_um_filter_35_8	35