Related genomes of genome U01AM based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

U01AM - Armatimonadetes bacterium AS09scLD_344

Proteome version: Genbank; ASM1251226v1; GCA_012512265.1; 17-APR-2020 with 3916 proteins.

‹

Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	U03AM	Armatimonadetes bacterium Ch1	1232
2	U02AM	Armatimonadetes bacterium NC_groundwater_1868_Pr3_B-0.1um_69_17	954
3	ARMRO	Armatimonas rosea	844
4	UC003	Abitibacteriaceae bacterium CP_BM_RX_R8_36	825
5	CHTCT	Chthonomonas calidirosea (strain DSM 23976 / ICMP 18418 / T49)	804
6	UC084	Candidatus Poribacteria bacterium Bin_402	799
7	SOLUE	Solibacter usitatus (strain Ellin6076)	756
8	HYDET	Hydrogenispora ethanolica	754
9	CHLAA	Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)	708
10	UC089	bacterium MAG-57	707

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYCI	Trypanosoma congolense (strain IL3000)	15
2	VITCO	Vittaforma corneae (strain ATCC 50505)	18
3	ENTBH	Enterocytozoon bieneusi (strain H348)	19
4	TRAHO	Trachipleistophora hominis	23
5	NEMP3	Nematocida parisii (strain ERTm3)	23
6	EDHAE	Edhazardia aedis (strain USNM 41457)	25
7	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	26
8	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	29
9	VAVCU	Vavraia culicis (isolate floridensis)	30
10	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	30