Related genomes of genome U01GE based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

U01GE - Gemmatimonadetes bacterium ARS69

Proteome version: Genbank; ASM268691v1; GCA_002686915.1; 13-JUL-2018 with 1392 proteins.

‹

Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC037	Candidatus Eisenbacteria bacterium Zod_Metabat.137	486
2	UC107	Calditrichaeota bacterium CLD2	439
3	UC057	Candidatus Eisenbacteria bacterium Fred_18-Q3-R57-64_MAXAC.354	432
4	UC056	bacterium Fred_18-Q3-R57-64_MAXAC.288	416
5	CALAY	Caldithrix abyssi	397
6	UC142	bacterium BMS3Bbin03	379
7	UC173	Acidobacteria bacterium Mor1	375
8	ANAD2	Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258)	372
9	LUTPR	Luteitalea pratensis	371
10	IGNAJ	Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16)	370

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	VITCO	Vittaforma corneae (strain ATCC 50505)	7
2	ENTBH	Enterocytozoon bieneusi (strain H348)	7
3	TRAHO	Trachipleistophora hominis	9
4	NEMP3	Nematocida parisii (strain ERTm3)	10
5	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	10
6	EDHAE	Edhazardia aedis (strain USNM 41457)	10
7	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	11
8	VAVCU	Vavraia culicis (isolate floridensis)	12
9	NOSCE	Nosema ceranae (strain BRL01)	13
10	SPRLO	Spraguea lophii (strain 42_110)	13