Related genomes of genome U04PL based on shared OMA groups

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

U04PL - Planctomycetes bacterium J058

Proteome version: Genbank; ASM369570v1; GCA_003695705.1; 29-OCT-2018 with 5087 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	U09PL	Planctomycetes bacterium NC_groundwater_1474_Ag_S-0.65um_73_34	841
2	U10PL	Planctomycetes bacterium NC_groundwater_1472_Ag_S-0.65um_69_29	803
3	MYXSD	Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8)	778
4	UC106	Planctomycetes bacterium SRT547	748
5	U07PL	Planctomycetes bacterium NC_groundwater_38_Pr7_B-0.1um_65_11	745
6	CORCM	Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2)	743
7	UC078	Candidatus Schekmanbacteria bacterium NC_groundwater_415_Ag_B-0.1um_66_15	741
8	MYXXD	Myxococcus xanthus (strain DK1622)	734
9	STIAD	Stigmatella aurantiaca (strain DW4/3-1)	727
10	SULCO	Sulfidibacter corallicola	712

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	15
2	VITCO	Vittaforma corneae (strain ATCC 50505)	19
3	TRAHO	Trachipleistophora hominis	22
4	NEMP3	Nematocida parisii (strain ERTm3)	23
5	EDHAE	Edhazardia aedis (strain USNM 41457)	24
6	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	24
7	VAVCU	Vavraia culicis (isolate floridensis)	26
8	SPRLO	Spraguea lophii (strain 42_110)	27
9	TRYCI	Trypanosoma congolense (strain IL3000)	27
10	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	28