Related genomes of genome U08PL based on shared OMA groups

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
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If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

U08PL - Planctomycetes bacterium NC_groundwater_288_Ag_S-0.65um_63_14

Proteome version: Genbank; ASM1617968v1; GCA_016179685.1; 21-DEC-2020 with 5068 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	U06PL	Planctomycetes bacterium H5_PLA8	1054
2	UC132	Candidatus Poribacteria bacterium PCPOR2b	991
3	SINAD	Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)	932
4	U03GE	Gemmatimonadetes bacterium RS821	849
5	U03AM	Armatimonadetes bacterium Ch1	806
6	U04GE	Gemmatimonadetes bacterium SB0661_bin_27	805
7	U07PL	Planctomycetes bacterium NC_groundwater_38_Pr7_B-0.1um_65_11	788
8	SOLUE	Solibacter usitatus (strain Ellin6076)	782
9	PIRSD	Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128)	754
10	UC084	Candidatus Poribacteria bacterium Bin_402	753

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYCI	Trypanosoma congolense (strain IL3000)	14
2	ENTBH	Enterocytozoon bieneusi (strain H348)	18
3	VITCO	Vittaforma corneae (strain ATCC 50505)	19
4	NEMP3	Nematocida parisii (strain ERTm3)	23
5	EDHAE	Edhazardia aedis (strain USNM 41457)	24
6	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	26
7	TRAHO	Trachipleistophora hominis	26
8	NOSCE	Nosema ceranae (strain BRL01)	30
9	SPRLO	Spraguea lophii (strain 42_110)	30
10	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	31