Related genomes of genome UC004 based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

UC004 - bacterium KR13_S3.mb.88

Proteome version: Genbank; ASM1890305v1; GCA_018903055.1; 16-JUN-2021 with 1124 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC133	Candidatus Abyssubacteria bacterium SURF_5	396
2	U04NT	Nitrospirae bacterium NC_groundwater_1774_Pr3_B-0.1um_61_24	395
3	GEOUR	Geotalea uraniireducens (strain Rf4)	389
4	U15DE	Deltaproteobacteria bacterium M_MetaBat.58	388
5	UC042	Elusimicrobia bacterium Zod_Metabat.39	387
6	UC174	Deltaproteobacteria bacterium GWC2_55_46	385
7	ACEAZ	Acetohalobium arabaticum (strain ATCC 49924 / DSM 5501 / Z-7288)	384
8	U02NI	Nitrospinae bacterium NC_groundwater_948_Pr1_S-0.2um_39_25	384
9	GEOSL	Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)	384
10	GEOSK	Geobacter sulfurreducens (strain DL-1 / KN400)	384

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYCI	Trypanosoma congolense (strain IL3000)	4
2	RALSL	Ralstonia solanacearum	8
3	ENTBH	Enterocytozoon bieneusi (strain H348)	11
4	VITCO	Vittaforma corneae (strain ATCC 50505)	13
5	TRAHO	Trachipleistophora hominis	14
6	EDHAE	Edhazardia aedis (strain USNM 41457)	14
7	SPRLO	Spraguea lophii (strain 42_110)	15
8	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	16
9	MEGSC	Megaselia scalaris	17
10	NEMP3	Nematocida parisii (strain ERTm3)	18