Related genomes of genome UC028 based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

UC028 - bacterium Zod_Metabat.886

Proteome version: Genbank; ASM1693467v1; GCA_016934675.1; 24-FEB-2021 with 4135 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC078	Candidatus Schekmanbacteria bacterium NC_groundwater_415_Ag_B-0.1um_66_15	934
2	UC182	Candidatus Vecturithrix granuli none	912
3	UC044	candidate division CSSED10-310 bacterium Zod_Metabat.419	886
4	DESAL	Desulfatibacillum aliphaticivorans	877
5	DESAA	Desulfatibacillum alkenivorans (strain AK-01)	877
6	U03MY	Myxococcales bacterium AS27yjCOA_30	831
7	UC041	Candidatus Fermentibacteria bacterium Zod_Metabat.355	825
8	GEOS8	Geobacter sp. (strain M18)	792
9	GEOUR	Geotalea uraniireducens (strain Rf4)	777
10	CITBB	Citrifermentans bemidjiense (strain ATCC BAA-1014 / DSM 16622 / JCM 12645 / Bem)	770

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	19
2	EDHAE	Edhazardia aedis (strain USNM 41457)	19
3	ENTBH	Enterocytozoon bieneusi (strain H348)	19
4	NEMP3	Nematocida parisii (strain ERTm3)	19
5	TRYCI	Trypanosoma congolense (strain IL3000)	21
6	VITCO	Vittaforma corneae (strain ATCC 50505)	22
7	TRAHO	Trachipleistophora hominis	22
8	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	25
9	VAVCU	Vavraia culicis (isolate floridensis)	26
10	NOSCE	Nosema ceranae (strain BRL01)	26