Related genomes of genome UC045 based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

UC045 - Candidatus Latescibacteria bacterium Zod_Metabat.481

Proteome version: Genbank; ASM1692749v1; GCA_016927495.1; 24-FEB-2021 with 4934 proteins.

‹

Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC107	Calditrichaeota bacterium CLD2	875
2	UC084	Candidatus Poribacteria bacterium Bin_402	865
3	DESAL	Desulfatibacillum aliphaticivorans	846
4	UC168	Candidatus Glassbacteria bacterium RIFCSPLOWO2_12_FULL_58_11 none	846
5	DESAA	Desulfatibacillum alkenivorans (strain AK-01)	845
6	UC166	Candidatus Raymondbacteria bacterium RIFOXYA2_FULL_49_16 none	839
7	UC182	Candidatus Vecturithrix granuli none	835
8	U03AM	Armatimonadetes bacterium Ch1	830
9	UC033	bacterium Zod_Metabat.1116	828
10	CALAY	Caldithrix abyssi	814

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYCI	Trypanosoma congolense (strain IL3000)	20
2	ENTBH	Enterocytozoon bieneusi (strain H348)	21
3	VITCO	Vittaforma corneae (strain ATCC 50505)	22
4	EDHAE	Edhazardia aedis (strain USNM 41457)	23
5	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	28
6	NEMP3	Nematocida parisii (strain ERTm3)	29
7	TRAHO	Trachipleistophora hominis	29
8	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	30
9	VAVCU	Vavraia culicis (isolate floridensis)	32
10	NANST	Nanobsidianus stetteri	32