Related genomes of genome UC053 based on shared OMA groups

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

UC053 - Candidatus Omnitrophica bacterium BS750m-G34

Proteome version: Genbank; ASM1678334v1; GCA_016783345.1; 01-FEB-2021 with 835 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC010	bacterium Modern_marine.mb.62	354
2	UC133	Candidatus Abyssubacteria bacterium SURF_5	333
3	U04NT	Nitrospirae bacterium NC_groundwater_1774_Pr3_B-0.1um_61_24	318
4	GEOUR	Geotalea uraniireducens (strain Rf4)	315
5	UC070	Desulfobacterales bacterium NC_groundwater_1491_Pr4_B-0.1um_43_5	314
6	GEOMG	Geobacter metallireducens (strain ATCC 53774 / DSM 7210 / GS-15)	311
7	GEOSK	Geobacter sulfurreducens (strain DL-1 / KN400)	310
8	GEODF	Geotalea daltonii (strain DSM 22248 / JCM 15807 / FRC-32)	309
9	UC084	Candidatus Poribacteria bacterium Bin_402	306
10	UC166	Candidatus Raymondbacteria bacterium RIFOXYA2_FULL_49_16 none	306

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYCI	Trypanosoma congolense (strain IL3000)	7
2	NEMP3	Nematocida parisii (strain ERTm3)	11
3	MEGSC	Megaselia scalaris	11
4	ENTBH	Enterocytozoon bieneusi (strain H348)	11
5	VITCO	Vittaforma corneae (strain ATCC 50505)	11
6	EDHAE	Edhazardia aedis (strain USNM 41457)	12
7	TRAHO	Trachipleistophora hominis	12
8	SPRLO	Spraguea lophii (strain 42_110)	13
9	RALSL	Ralstonia solanacearum	13
10	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	13