Related genomes of genome UC063 based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

UC063 - Candidatus Peregrinibacteria bacterium Lyne_18-Q3-R50-59_MAXAC.411_cln

Proteome version: Genbank; ASM1669975v1; GCA_016699755.1; 19-JAN-2021 with 1302 proteins.

‹

Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ECO45	Escherichia coli O45:K1 (strain S88 / ExPEC)	304
2	SALEP	Salmonella enteritidis PT4 (strain P125109)	303
3	SALT4	Salmonella typhimurium (strain 4/74)	302
4	SALG2	Salmonella gallinarum (strain 287/91 / NCTC 13346)	301
5	ECO81	Escherichia coli O81 (strain ED1a)	301
6	KLEVT	Klebsiella variicola (strain At-22)	301
7	ECOSM	Escherichia coli (strain SMS-3-5 / SECEC)	301
8	SALTS	Salmonella typhimurium (strain SL1344)	301
9	SALT1	Salmonella typhimurium (strain 14028s / SGSC 2262)	301
10	SALTD	Salmonella typhimurium (strain D23580)	301

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYCI	Trypanosoma congolense (strain IL3000)	13
2	ENTBH	Enterocytozoon bieneusi (strain H348)	15
3	MEGSC	Megaselia scalaris	15
4	RALSL	Ralstonia solanacearum	16
5	TRAHO	Trachipleistophora hominis	17
6	VITCO	Vittaforma corneae (strain ATCC 50505)	18
7	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	19
8	EIMMA	Eimeria maxima	22
9	EDHAE	Edhazardia aedis (strain USNM 41457)	23
10	SYMMI	Symbiodinium microadriaticum	24