Related genomes of genome UC066 based on shared OMA groups

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
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If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

UC066 - Candidatus Niyogibacteria bacterium NC_groundwater_707_Ag_S-0.2um_45_26

Proteome version: Genbank; ASM1643248v1; GCA_016432485.1; 29-DEC-2020 with 879 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC069	Candidatus Kerfeldbacteria bacterium NC_groundwater_1953_Pr3_S-0.2um_48_12	209
2	UC147	bacterium CG_4_10_14_0_2_um_filter_33_32	207
3	UC007	Patescibacteria group bacterium MM_PC_MetaG.mb.169	204
4	UC181	candidate division CPR2 bacterium GW2011_GWC2_39_35 none	202
5	CLOB8	Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052)	202
6	ROSCS	Roseiflexus castenholzii (strain DSM 13941 / HLO8)	201
7	CHLSY	Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl)	200
8	CHLAA	Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)	200
9	PRIM1	Priestia megaterium (strain ATCC 12872 / QMB1551)	200
10	SPHTD	Sphaerobacter thermophilus (strain DSM 20745 / S 6022)	197

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYCI	Trypanosoma congolense (strain IL3000)	4
2	RALSL	Ralstonia solanacearum	4
3	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	9
4	EDHAE	Edhazardia aedis (strain USNM 41457)	9
5	RETFI	Reticulomyxa filosa	12
6	NOSB1	Nosema bombycis (strain CQ1 / CVCC 102059)	12
7	ENTBH	Enterocytozoon bieneusi (strain H348)	13
8	MEGSC	Megaselia scalaris	13
9	VITCO	Vittaforma corneae (strain ATCC 50505)	15
10	UC126	archaeon B48_G17	15