Related genomes of genome UC112 based on shared OMA groups

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

UC112 - Candidatus Gracilibacteria bacterium 28_42_T64

Proteome version: Genbank; ASM456359v2; GCA_004563595.2; 25-OCT-2019 with 1185 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC063	Candidatus Peregrinibacteria bacterium Lyne_18-Q3-R50-59_MAXAC.411_cln	242
2	SERSA	Serratia plymuthica (strain AS9)	225
3	PSEA8	Pseudomonas aeruginosa (strain LESB58)	225
4	PSEA7	Pseudomonas aeruginosa (strain PA7)	224
5	PSEAE	Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)	222
6	PSEAB	Pseudomonas aeruginosa (strain UCBPP-PA14)	222
7	BACCZ	Bacillus cereus (strain ZK / E33L)	222
8	SERP5	Serratia proteamaculans (strain 568)	222
9	BACC4	Bacillus cereus (strain B4264)	222
10	BACMK	Bacillus mycoides (strain KBAB4)	221

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYCI	Trypanosoma congolense (strain IL3000)	5
2	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	6
3	SYMMI	Symbiodinium microadriaticum	9
4	ENTBH	Enterocytozoon bieneusi (strain H348)	9
5	TRAHO	Trachipleistophora hominis	10
6	VITCO	Vittaforma corneae (strain ATCC 50505)	10
7	RALSL	Ralstonia solanacearum	10
8	MEGSC	Megaselia scalaris	12
9	NOSCE	Nosema ceranae (strain BRL01)	12
10	EDHAE	Edhazardia aedis (strain USNM 41457)	12