Related genomes of genome UC136 based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

UC136 - bacterium UBA9089

Proteome version: Genbank; ASM348501v1; GCA_003485015.1; 06-SEP-2018 with 1302 proteins.

‹

Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC006	bacterium OS_PC_MetaG.mb.171	477
2	UC133	Candidatus Abyssubacteria bacterium SURF_5	443
3	DESAA	Desulfatibacillum alkenivorans (strain AK-01)	432
4	DESAL	Desulfatibacillum aliphaticivorans	431
5	GEOUR	Geotalea uraniireducens (strain Rf4)	421
6	GEOSK	Geobacter sulfurreducens (strain DL-1 / KN400)	421
7	GEOSL	Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)	420
8	U15DE	Deltaproteobacteria bacterium M_MetaBat.58	417
9	GEOSM	Geobacter sp. (strain M21)	417
10	CITBB	Citrifermentans bemidjiense (strain ATCC BAA-1014 / DSM 16622 / JCM 12645 / Bem)	417

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	VITCO	Vittaforma corneae (strain ATCC 50505)	6
2	EDHAE	Edhazardia aedis (strain USNM 41457)	6
3	ENTBH	Enterocytozoon bieneusi (strain H348)	8
4	NEMP3	Nematocida parisii (strain ERTm3)	9
5	TRAHO	Trachipleistophora hominis	9
6	NOSCE	Nosema ceranae (strain BRL01)	9
7	SPRLO	Spraguea lophii (strain 42_110)	10
8	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	10
9	TRYCI	Trypanosoma congolense (strain IL3000)	10
10	MEGSC	Megaselia scalaris	11