Related genomes of genome UC148 based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

UC148 - bacterium (Candidatus Torokbacteria) CG_4_10_14_0_2_um_filter_35_8

Proteome version: Genbank; ASM279213v1; GCA_002792135.1; 16-NOV-2017 with 848 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC007	Patescibacteria group bacterium MM_PC_MetaG.mb.169	222
2	UC147	bacterium CG_4_10_14_0_2_um_filter_33_32	217
3	UC069	Candidatus Kerfeldbacteria bacterium NC_groundwater_1953_Pr3_S-0.2um_48_12	211
4	UC181	candidate division CPR2 bacterium GW2011_GWC2_39_35 none	206
5	CLOBM	Clostridium botulinum (strain Loch Maree / Type A3)	189
6	ACET2	Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372)	188
7	CLOBH	Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A)	186
8	ACET1	Acetivibrio thermocellus (strain DSM 1313 / LMG 6656 / LQ8)	186
9	CLOB1	Clostridium botulinum (strain ATCC 19397 / Type A)	185
10	DETAL	Dethiobacter alkaliphilus	184

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYCI	Trypanosoma congolense (strain IL3000)	3
2	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	6
3	TRAHO	Trachipleistophora hominis	8
4	PHYAT	Physella acuta	9
5	RALSL	Ralstonia solanacearum	9
6	VITCO	Vittaforma corneae (strain ATCC 50505)	9
7	SYMMI	Symbiodinium microadriaticum	9
8	ENTBH	Enterocytozoon bieneusi (strain H348)	10
9	EDHAE	Edhazardia aedis (strain USNM 41457)	11
10	RETFI	Reticulomyxa filosa	11