Related genomes of genome UC168 based on shared OMA groups

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

UC168 - Candidatus Glassbacteria bacterium RIFCSPLOWO2_12_FULL_58_11 none

Proteome version: Genbank; ASM178082v1; GCA_001780825.1; 19-OCT-2016 with 2888 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC045	Candidatus Latescibacteria bacterium Zod_Metabat.481	846
2	UC107	Calditrichaeota bacterium CLD2	736
3	CALAY	Caldithrix abyssi	677
4	UC142	bacterium BMS3Bbin03	675
5	UC133	Candidatus Abyssubacteria bacterium SURF_5	665
6	SOLUE	Solibacter usitatus (strain Ellin6076)	664
7	UC166	Candidatus Raymondbacteria bacterium RIFOXYA2_FULL_49_16 none	653
8	LUTPR	Luteitalea pratensis	648
9	DESAL	Desulfatibacillum aliphaticivorans	640
10	DESAA	Desulfatibacillum alkenivorans (strain AK-01)	640

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	13
2	EDHAE	Edhazardia aedis (strain USNM 41457)	15
3	VITCO	Vittaforma corneae (strain ATCC 50505)	15
4	TRYCI	Trypanosoma congolense (strain IL3000)	15
5	NEMP3	Nematocida parisii (strain ERTm3)	17
6	TRAHO	Trachipleistophora hominis	20
7	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	21
8	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	23
9	NOSCE	Nosema ceranae (strain BRL01)	24
10	VAVCU	Vavraia culicis (isolate floridensis)	24