Related genomes of genome UC171 based on shared OMA groups

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
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If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

UC171 - candidate division CPR3 bacterium GWF2_35_18 none

Proteome version: Genbank; ASM177113v1; GCA_001771135.1; 18-OCT-2016 with 1046 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC069	Candidatus Kerfeldbacteria bacterium NC_groundwater_1953_Pr3_S-0.2um_48_12	260
2	UC094	candidate division WWE3 bacterium W9_Combined_metabat1_117	259
3	CHLSY	Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl)	257
4	CHLAA	Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)	257
5	HYDET	Hydrogenispora ethanolica	255
6	DESHY	Desulfitobacterium hafniense (strain Y51)	252
7	DESHD	Desulfitobacterium hafniense (strain DSM 10664 / DCB-2)	250
8	ROSS1	Roseiflexus sp. (strain RS-1)	249
9	UC181	candidate division CPR2 bacterium GW2011_GWC2_39_35 none	247
10	UC061	Candidatus Roizmanbacteria bacterium Kalu_18-Q3-R12-55_MAXAC.194_uni	247

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYCI	Trypanosoma congolense (strain IL3000)	4
2	RALSL	Ralstonia solanacearum	5
3	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	8
4	EDHAE	Edhazardia aedis (strain USNM 41457)	9
5	TRAHO	Trachipleistophora hominis	11
6	ENTBH	Enterocytozoon bieneusi (strain H348)	11
7	VITCO	Vittaforma corneae (strain ATCC 50505)	14
8	VAVCU	Vavraia culicis (isolate floridensis)	15
9	SYMMI	Symbiodinium microadriaticum	15
10	EIMMA	Eimeria maxima	15