Related genomes of genome UC181 based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

UC181 - candidate division CPR2 bacterium GW2011_GWC2_39_35 none

Proteome version: Genbank; ASM99506v1; GCA_000995065.1; 07-MAY-2015 with 1125 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC147	bacterium CG_4_10_14_0_2_um_filter_33_32	365
2	CLOB8	Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052)	279
3	UC007	Patescibacteria group bacterium MM_PC_MetaG.mb.169	279
4	DESRL	Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIMB 8452 / DL)	278
5	CLOAE	Clostridium acetobutylicum (strain EA 2018)	276
6	CLOAB	Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)	276
7	CLOBK	Clostridium botulinum (strain Okra / Type B1)	273
8	DESRM	Desulfotomaculum reducens (strain MI-1)	273
9	CLOBL	Clostridium botulinum (strain Langeland / NCTC 10281 / Type F)	273
10	CLOBM	Clostridium botulinum (strain Loch Maree / Type A3)	272

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYCI	Trypanosoma congolense (strain IL3000)	5
2	RALSL	Ralstonia solanacearum	6
3	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	11
4	VITCO	Vittaforma corneae (strain ATCC 50505)	12
5	MEGSC	Megaselia scalaris	12
6	EDHAE	Edhazardia aedis (strain USNM 41457)	13
7	ENTBH	Enterocytozoon bieneusi (strain H348)	15
8	EIMMA	Eimeria maxima	17
9	TRAHO	Trachipleistophora hominis	17
10	RETFI	Reticulomyxa filosa	17