Related genomes of genome UC183 based on shared OMA groups

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

UC183 - Candidatus Entotheonella factor none

Proteome version: Genbank; v3; GCA_000522425.1; 31-JAN-2014 with 8438 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	U16DE	Deltaproteobacteria bacterium NC_groundwater_25_Pr7_B-0.1um_64_59	1137
2	BRADU	Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)	1121
3	PARXL	Paraburkholderia xenovorans (strain LB400)	1115
4	CUPNN	Cupriavidus necator (strain ATCC 43291 / DSM 13513 / CCUG 52238 / LMG 8453 / N-1)	1096
5	BRASB	Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)	1078
6	CUPNH	Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)	1052
7	BRASO	Bradyrhizobium sp. (strain ORS 278)	1034
8	UC014	Nitrospinaceae bacterium SI073_bin188	1023
9	AMYMS	Amycolatopsis mediterranei (strain S699)	1020
10	CUPPJ	Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197)	1014

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRAHO	Trachipleistophora hominis	22
2	ENTBH	Enterocytozoon bieneusi (strain H348)	23
3	VITCO	Vittaforma corneae (strain ATCC 50505)	26
4	EDHAE	Edhazardia aedis (strain USNM 41457)	26
5	NANST	Nanobsidianus stetteri	27
6	VAVCU	Vavraia culicis (isolate floridensis)	29
7	TRYCI	Trypanosoma congolense (strain IL3000)	29
8	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	29
9	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	30
10	NEMP3	Nematocida parisii (strain ERTm3)	31