Related genomes of genome UREPA based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

UREPA - Ureaplasma parvum serovar 3 (strain ATCC 700970)

Proteome version: 02-MAR-2010 (Rel. 118, Last updated, Version 120) with 611 proteins.

‹

Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UREP2	Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736)	590
2	UREU1	Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western)	504
3	MYCGH	Mycoplasma gallisepticum (strain R(high / passage 156))	265
4	MYCGA	Mycoplasma gallisepticum (strain R(low / passage 15 / clone 2))	265
5	MYCGF	Mycoplasma gallisepticum (strain F)	262
6	MYCLG	Mycoplasma leachii (strain DSM 21131 / NCTC 10133 / N29 / PG50)	249
7	MYCCT	Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154)	245
8	MYCBH	Mycoplasmopsis bovis (strain Hubei-1)	244
9	MYCL9	Mycoplasma leachii (strain 99/014/6)	244
10	MYCMG	Mycoplasma mycoides subsp. mycoides SC (strain Gladysdale)	243

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	3
2	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	8
3	VITCO	Vittaforma corneae (strain ATCC 50505)	9
4	TRYCI	Trypanosoma congolense (strain IL3000)	9
5	ENTBH	Enterocytozoon bieneusi (strain H348)	10
6	SYMMI	Symbiodinium microadriaticum	10
7	EDHAE	Edhazardia aedis (strain USNM 41457)	11
8	NANGC	Nannochloropsis gaditana (strain CCMP526)	11
9	MEGSC	Megaselia scalaris	14
10	TRAHO	Trachipleistophora hominis	15