Related genomes of genome YERPE based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

YERPE - Yersinia pestis CO92

Proteome version: 01-SEP-2009 (Rel. 110, Last updated, Version 109) with 4006 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	YERPA	Yersinia pestis bv. Antiqua (strain Antiqua)	3665
2	YERPP	Yersinia pestis (strain Pestoides F)	3562
3	YERPN	Yersinia pestis bv. Antiqua (strain Nepal516)	3552
4	YERPH	Yersinia pestis bv. Medievalis (strain Harbin 35)	3514
5	YERPS	Yersinia pseudotuberculosis serotype I (strain IP32953)	3496
6	YERPB	Yersinia pseudotuberculosis serotype IB (strain PB1/+)	3460
7	YERPY	Yersinia pseudotuberculosis serotype O:3 (strain YPIII)	3351
8	YERP3	Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)	3349
9	YERPZ	Yersinia pestis (strain Z176003)	3287
10	YERPG	Yersinia pestis bv. Antiqua (strain Angola)	3263

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	VITCO	Vittaforma corneae (strain ATCC 50505)	20
2	ENTBH	Enterocytozoon bieneusi (strain H348)	23
3	EDHAE	Edhazardia aedis (strain USNM 41457)	23
4	TRAHO	Trachipleistophora hominis	27
5	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	30
6	NEMP3	Nematocida parisii (strain ERTm3)	31
7	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	31
8	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	32
9	NOSCE	Nosema ceranae (strain BRL01)	34
10	VAVCU	Vavraia culicis (isolate floridensis)	35