Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0745499 with 18 members (sushi nidogen and EGF like domains)

Gnathostomata / Euteleostomi / Neopterygii / Teleostei / Clupeocephala / Euteleosteomorpha / Acanthomorphata / Percomorphaceae / Ovalentaria /

Completeness score: 0.95

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

33.1%

This HOG has 8960 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0795290	Opisthokonta	7		42.9%	18
HOG:E0753929	Vertebrata	213		14.1%	16
HOG:E0759111	Deuterostomia	16		12.5%	16
HOG:E0784348	Eumetazoa	578		20.8%	15
HOG:E0777854	Eumetazoa	464		7.5%	15
HOG:E0756029	Chordata	169		14.2%	15
HOG:E0747004	Gnathostomata	152		21.1%	15
HOG:E0746195	Gnathostomata	146		40.4%	15
HOG:E0739101	Euteleostomi	139		21.6%	15
HOG:E0751376	Gnathostomata	139		23.0%	15
HOG:E0653995	Protostomia	117		4.3%	15
HOG:E0733230	Amniota	75		20.0%	15
HOG:E0639490	Pancrustacea	68		4.4%	15
HOG:E0536727	Lophotrochozoa	53		9.4%	15
HOG:E0781770	Eumetazoa	48		8.3%	15
HOG:E0778078	Eumetazoa	35		8.6%	15
HOG:E0762485	Bilateria	33		12.1%	15
HOG:E0731974	Mammalia	32		46.9%	15
HOG:E1027735	LUCA	29		6.9%	15
HOG:E0519397	Gastropoda	25		8.0%	15
HOG:E0642619	Arthropoda	25		20.0%	15
HOG:E0569695	Nematoda	21		9.5%	15
HOG:E0531658	Mollusca	19		21.1%	15
HOG:E0752368	Vertebrata	19		10.5%	15
HOG:E0536657	Lophotrochozoa	17		23.5%	15

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