Related genomes of genome AFIC4 based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

AFIC4 - Afipia carboxidovorans (strain OM4)

Proteome version: 23-NOV-2011 (Rel. 110, Last updated, Version 3) with 3561 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	AFIC5	Afipia carboxidovorans (strain ATCC 49405 / DSM 1227 / KCTC 32145 / OM5)	3334
2	BRASB	Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)	2034
3	RHOPT	Rhodopseudomonas palustris (strain TIE-1)	1974
4	BRADU	Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)	1971
5	RHOPX	Rhodopseudomonas palustris (strain DX-1)	1963
6	RHOPA	Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)	1919
7	NITHX	Nitrobacter hamburgensis (strain DSM 10229 / NCIMB 13809 / X14)	1915
8	RHOPB	Rhodopseudomonas palustris (strain BisB18)	1893
9	BRASO	Bradyrhizobium sp. (strain ORS 278)	1891
10	RHOP2	Rhodopseudomonas palustris (strain HaA2)	1887

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	18
2	VITCO	Vittaforma corneae (strain ATCC 50505)	24
3	TRAHO	Trachipleistophora hominis	25
4	TRYCI	Trypanosoma congolense (strain IL3000)	26
5	EDHAE	Edhazardia aedis (strain USNM 41457)	27
6	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	27
7	NANEQ	Nanoarchaeum equitans (strain Kin4-M)	28
8	NOSCE	Nosema ceranae (strain BRL01)	30
9	NANST	Nanobsidianus stetteri	31
10	NEMP3	Nematocida parisii (strain ERTm3)	32