Related genomes of genome ALKCA based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

ALKCA - Alkalicella caledoniensis

Proteome version: Refseq; ASM1446701v1; GCA_014467015.1; 03-SEP-2020 with 3489 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ALKMQ	Alkaliphilus metalliredigens (strain QYMF)	1265
2	DESHY	Desulfitobacterium hafniense (strain Y51)	1015
3	CLOBJ	Clostridium botulinum (strain Kyoto / Type A2)	1011
4	NATTJ	Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF)	1009
5	DESHD	Desulfitobacterium hafniense (strain DSM 10664 / DCB-2)	1001
6	CLOBH	Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A)	996
7	CLOBL	Clostridium botulinum (strain Langeland / NCTC 10281 / Type F)	993
8	CLOB6	Clostridium botulinum (strain 657 / Type Ba4)	992
9	CLOBK	Clostridium botulinum (strain Okra / Type B1)	989
10	CLOB1	Clostridium botulinum (strain ATCC 19397 / Type A)	987

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	18
2	VITCO	Vittaforma corneae (strain ATCC 50505)	18
3	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	18
4	EDHAE	Edhazardia aedis (strain USNM 41457)	18
5	TRAHO	Trachipleistophora hominis	20
6	TRYCI	Trypanosoma congolense (strain IL3000)	20
7	NEMP3	Nematocida parisii (strain ERTm3)	21
8	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	24
9	VAVCU	Vavraia culicis (isolate floridensis)	25
10	NOSCE	Nosema ceranae (strain BRL01)	25