Related genomes of genome ARMRO based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

ARMRO - Armatimonas rosea

Proteome version: Refseq; ASM1420250v1; GCA_014202505.1; 14-AUG-2020 with 5897 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	FIMGI	Fimbriimonas ginsengisoli	1189
2	UC003	Abitibacteriaceae bacterium CP_BM_RX_R8_36	1159
3	CHTCT	Chthonomonas calidirosea (strain DSM 23976 / ICMP 18418 / T49)	1024
4	U02AM	Armatimonadetes bacterium NC_groundwater_1868_Pr3_B-0.1um_69_17	890
5	U01AM	Armatimonadetes bacterium AS09scLD_344	807
6	SPILD	Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896)	757
7	SINAD	Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)	748
8	PEDPL	Pedosphaera parvula (strain Ellin514)	745
9	RUNSL	Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4)	731
10	SOLUE	Solibacter usitatus (strain Ellin6076)	731

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	VITCO	Vittaforma corneae (strain ATCC 50505)	18
2	ENTBH	Enterocytozoon bieneusi (strain H348)	20
3	TRYCI	Trypanosoma congolense (strain IL3000)	21
4	EDHAE	Edhazardia aedis (strain USNM 41457)	22
5	TRAHO	Trachipleistophora hominis	25
6	SPRLO	Spraguea lophii (strain 42_110)	26
7	NEMP3	Nematocida parisii (strain ERTm3)	28
8	EIMMA	Eimeria maxima	29
9	VAVCU	Vavraia culicis (isolate floridensis)	29
10	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	29