Related genomes of genome BACAA based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

BACAA - Bacillus anthracis (strain A0248)

Proteome version: 10-AUG-2010 (Rel. 124, Last updated, Version 16) with 5291 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	BACAC	Bacillus anthracis (strain CDC 684 / NRRL 3495)	4973
2	BACAN	Bacillus anthracis str. 'Ames Ancestor'	4943
3	BACC0	Bacillus cereus (strain AH820)	4474
4	BACAI	Bacillus cereus var. anthracis (strain CI)	4448
5	BACC3	Bacillus cereus (strain 03BB102)	4380
6	BACCZ	Bacillus cereus (strain ZK / E33L)	4303
7	BACHK	Bacillus thuringiensis subsp. konkukian (strain 97-27)	4264
8	BACC7	Bacillus cereus (strain AH187)	4208
9	BACT0	Bacillus thuringiensis subsp. finitimus (strain YBT-020)	4142
10	BACCQ	Bacillus cereus (strain Q1)	4091

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	23
2	VITCO	Vittaforma corneae (strain ATCC 50505)	23
3	TRAHO	Trachipleistophora hominis	25
4	EDHAE	Edhazardia aedis (strain USNM 41457)	27
5	NEMP3	Nematocida parisii (strain ERTm3)	32
6	TRYCI	Trypanosoma congolense (strain IL3000)	32
7	VAVCU	Vavraia culicis (isolate floridensis)	34
8	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	37
9	SPRLO	Spraguea lophii (strain 42_110)	37
10	NOSCE	Nosema ceranae (strain BRL01)	38